PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 292aa    MW: 31037.1 Da    PI: 9.606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-073558225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_004493580.1 35 KSKPCTKFFSTSGCPFGESCHFLH 58
                    7789******************** PP

2zf-CCCH25.81.8e-08100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k ++C+ f     Ck+Gd+C+FaHg+
  XP_004493580.1 100 KSRICNKFNTAEGCKFGDKCHFAHGE 125
                     6799********************96 PP

3zf-CCCH345e-11262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f + G C +GdrC+FaHg
  XP_004493580.1 262 FKTKLCENFTK-GSCTFGDRCHFAHG 286
                     69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SMARTSM003560.33360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-63459IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-83558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-1396130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-797129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18898126IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5100125IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.14E-15157239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.8E-16166235IPR004088K Homology domain, type 1
SMARTSM003227.7E-12166236IPR004087K Homology domain
PROSITE profilePS5008414.802167231IPR004088K Homology domain, type 1
CDDcd001053.53E-15169232No hitNo description
PfamPF000137.9E-12169232IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.7E-15257291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8261291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427261288IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7261287IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDMRKRGRSE HGFNNGGFKK SRQEMDSLST GVGSKSKPCT KFFSTSGCPF GESCHFLHYV  60
PGGYNAVAQM MNLAPAAPPA PRNVAPPPHA PNGSAPSAVK SRICNKFNTA EGCKFGDKCH  120
FAHGEWELGK PVAPSFDDHR PMGPPNVGRF GGRMEPPPGP AASFGANATA KISVEASLAG  180
AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGN FEQIKDASNM VKDLLVTLQM  240
SAPPKSNQGA PGAPGHHHGS NFKTKLCENF TKGSCTFGDR CHFAHGAAEL RK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493580.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLV7CYE70.0V7CYE7_PHAVU; Uncharacterized protein
STRINGGLYMA19G32910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-87C3H family protein